Variant report

Variant	rs72976928
Chromosome Location	chr6:139836272-139836273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694875..139697306-chr6:139836159..139839254,4	K562	blood:
2	chr6:139829217..139832116-chr6:139835147..139837059,2	K562	blood:
3	chr6:139832742..139835243-chr6:139835600..139839246,3	K562	blood:
4	chr6:139835055..139838753-chr6:139840846..139843120,3	K562	blood:
5	chr6:139829657..139832116-chr6:139834405..139837059,2	K562	blood:
6	chr6:139811168..139812845-chr6:139833635..139836382,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17513809	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs589235	0.83[ASN][1000 genomes]
rs592423	0.81[ASN][1000 genomes]
rs60562771	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs608736	0.83[ASN][1000 genomes]
rs628751	0.83[ASN][1000 genomes]
rs643381	0.83[ASN][1000 genomes]
rs72976934	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72976941	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139836400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
3	chr6:139835600-139836400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:139835600-139837000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:139835600-139837000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:139835800-139836400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:139835800-139837000	Enhancers	Fetal Heart	heart
8	chr6:139836000-139837000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:139836000-139837000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:139836000-139837000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:139836000-139837000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:139836000-139837000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:139836000-139837000	Enhancers	HepG2	liver
14	chr6:139836000-139837200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:139836000-139837800	Enhancers	K562	blood
16	chr6:139836000-139838000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:139836200-139836600	Enhancers	GM12878-XiMat	blood
18	chr6:139836200-139836800	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:139836200-139837000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:139836200-139837000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:139836200-139837000	Enhancers	HSMMtube	muscle
22	chr6:139836200-139837000	Enhancers	Osteobl	bone
23	chr6:139836200-139837200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:139836200-139837400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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