Variant report

Variant	rs72976934
Chromosome Location	chr6:139838380-139838381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694875..139697306-chr6:139836159..139839254,4	K562	blood:
2	chr6:139832742..139835243-chr6:139835600..139839246,3	K562	blood:
3	chr6:139693313..139697618-chr6:139836425..139839153,5	K562	blood:
4	chr6:139836503..139839268-chr6:139841620..139844665,3	K562	blood:
5	chr6:139835055..139838753-chr6:139840846..139843120,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17513809	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60562771	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72976928	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72976941	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139837000-139838800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:139837000-139839200	Weak transcription	Fetal Heart	heart
4	chr6:139837000-139840000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:139837000-139840000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:139837000-139840000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:139837000-139840400	Weak transcription	HSMMtube	muscle
8	chr6:139837000-139840600	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:139837000-139840600	Weak transcription	NHDF-Ad	bronchial
10	chr6:139837000-139840600	Weak transcription	Osteobl	bone
11	chr6:139837000-139843600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:139837000-139843600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:139837000-139843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:139837000-139843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:139837200-139840400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:139837200-139840600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:139837200-139840600	Weak transcription	Placenta	Placenta
18	chr6:139837200-139840800	Weak transcription	Adipose Nuclei	Adipose
19	chr6:139837600-139838400	Enhancers	NHEK	skin
20	chr6:139837800-139838400	Enhancers	Stomach Mucosa	stomach
21	chr6:139837800-139839400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:139837800-139840400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:139837800-139840600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:139838000-139840600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:139838000-139841000	Weak transcription	HMEC	breast
26	chr6:139838000-139844000	Weak transcription	Hela-S3	cervix
27	chr6:139838200-139839800	Enhancers	K562	blood
28	chr6:139838200-139841200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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