Variant report

Variant	rs72977014
Chromosome Location	chr3:140369970-140369971
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1389812	0.99[EUR][1000 genomes]
rs1494529	1.00[ASN][1000 genomes]
rs1494530	1.00[ASN][1000 genomes]
rs1696212	0.86[EUR][1000 genomes]
rs17350780	1.00[ASN][1000 genomes]
rs17351238	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834869	1.00[ASN][1000 genomes]
rs1845473	1.00[ASN][1000 genomes]
rs1845474	1.00[ASN][1000 genomes]
rs1845475	1.00[ASN][1000 genomes]
rs1845476	1.00[ASN][1000 genomes]
rs35038121	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726121	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58008037	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58741993	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6439940	0.84[EUR][1000 genomes]
rs6439941	0.85[EUR][1000 genomes]
rs6439942	0.85[EUR][1000 genomes]
rs6780472	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6784484	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6798040	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6807178	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6808213	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs698674	0.81[EUR][1000 genomes]
rs72977046	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72977051	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72977054	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72977058	0.82[EUR][1000 genomes]
rs72977066	0.85[EUR][1000 genomes]
rs72977068	0.85[EUR][1000 genomes]
rs72977071	0.85[EUR][1000 genomes]
rs72977074	0.85[EUR][1000 genomes]
rs72977076	0.84[EUR][1000 genomes]
rs72977077	0.85[EUR][1000 genomes]
rs72981918	1.00[ASN][1000 genomes]
rs7612862	0.85[EUR][1000 genomes]
rs7613608	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7617160	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622801	0.85[EUR][1000 genomes]
rs7622894	0.85[EUR][1000 genomes]
rs7635537	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7645011	0.85[EUR][1000 genomes]
rs7645261	0.85[EUR][1000 genomes]
rs7645465	0.85[EUR][1000 genomes]
rs837662	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv870185	chr3:140265153-140395673	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv877546	chr3:140299603-140468370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv997694	chr3:140324012-140464786	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1008123	chr3:140328825-140464786	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv460869	chr3:140330108-140450655	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv591864	chr3:140330108-140450655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv818170	chr3:140330108-140454836	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1008838	chr3:140355975-140588726	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv877547	chr3:140366948-140575287	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140369600-140370200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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