Variant report

Variant	rs72977054
Chromosome Location	chr3:140427573-140427574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:140418901..140421597-chr3:140424922..140429163,3	K562	blood:
2	chr17:41462273..41463839-chr3:140426790..140428290,2	K562	blood:
3	chr17:41400537..41402663-chr3:140426790..140428290,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1389812	0.84[EUR][1000 genomes]
rs17352519	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35038121	0.81[AMR][1000 genomes]
rs55726121	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58008037	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58741993	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58956782	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60130391	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61491602	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6439940	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6439941	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6439942	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780472	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784484	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6807178	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs698674	0.81[EUR][1000 genomes]
rs72977014	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72977046	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72977051	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72977053	0.84[AMR][1000 genomes]
rs72977058	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72977059	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72977066	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72977068	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72977071	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72977074	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72977076	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72977077	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72977079	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72977082	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72977087	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72977090	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72977098	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72979010	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72979012	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72979014	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979024	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979026	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979027	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979028	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979029	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979030	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979031	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979033	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979035	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979037	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979040	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979042	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979043	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979047	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979050	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979054	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979056	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979058	0.80[EUR][1000 genomes]
rs72979060	0.82[EUR][1000 genomes]
rs72979063	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979064	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979065	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979067	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979068	0.82[EUR][1000 genomes]
rs72979070	0.82[EUR][1000 genomes]
rs72979074	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979078	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979081	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979083	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72979085	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7612862	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7613608	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617160	0.85[EUR][1000 genomes]
rs7617576	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7618685	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7618942	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7619121	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7622801	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7622894	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7627814	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7628091	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7630367	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7630456	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7635537	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7639512	0.82[EUR][1000 genomes]
rs7640555	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7640640	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7645011	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645261	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645465	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877546	chr3:140299603-140468370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv997694	chr3:140324012-140464786	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1008123	chr3:140328825-140464786	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv460869	chr3:140330108-140450655	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv591864	chr3:140330108-140450655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv818170	chr3:140330108-140454836	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1008838	chr3:140355975-140588726	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv877547	chr3:140366948-140575287	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv829743	chr3:140384246-140559778	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140425800-140427600	Weak transcription	NHDF-Ad	bronchial
2	chr3:140427000-140427600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:140427200-140427600	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr3:140427200-140428000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:140427200-140428000	Enhancers	Liver	Liver
6	chr3:140427200-140428000	Enhancers	Osteobl	bone
7	chr3:140427200-140428400	Enhancers	Right Atrium	heart
8	chr3:140427200-140428600	Enhancers	Pancreas	Pancrea
9	chr3:140427200-140429200	Enhancers	Ovary	ovary
10	chr3:140427400-140427600	Enhancers	Fetal Muscle Leg	muscle
11	chr3:140427400-140427800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:140427400-140428000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:140427400-140428200	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links