Variant report

Variant	rs72977939
Chromosome Location	chr6:140671467-140671468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs72975822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978000	1.00[AFR][1000 genomes]
rs72979807	1.00[AFR][1000 genomes]
rs72979812	1.00[AFR][1000 genomes]
rs72979884	1.00[AFR][1000 genomes]
rs73776141	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140668000-140671600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:140668400-140674400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:140668800-140671800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:140669000-140676400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:140670600-140672800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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