Variant report

Variant	rs72979812
Chromosome Location	chr6:140759748-140759749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72975822	1.00[AFR][1000 genomes]
rs72977939	1.00[AFR][1000 genomes]
rs72978000	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72979807	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72979884	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140757000-140760600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:140757200-140759800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:140757200-140759800	Enhancers	HMEC	breast
4	chr6:140757600-140762400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:140758000-140760400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:140758000-140761200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:140758000-140761400	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:140758000-140762200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:140758000-140762200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:140758000-140763600	Enhancers	Fetal Heart	heart
11	chr6:140758200-140759800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:140758200-140761000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:140758600-140759800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:140758600-140760000	Enhancers	Osteobl	bone
15	chr6:140758800-140759800	Enhancers	NHEK	skin
16	chr6:140759000-140761000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:140759200-140759800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:140759200-140759800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:140759200-140759800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:140759200-140759800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:140759200-140759800	Enhancers	NHDF-Ad	bronchial
22	chr6:140759200-140760000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:140759200-140763600	Enhancers	NHLF	lung
24	chr6:140759400-140759800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:140759400-140759800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:140759400-140759800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:140759400-140761200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:140759600-140759800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:140759600-140760400	Weak transcription	HSMM	muscle
30	chr6:140759600-140760800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:140759600-140760800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:140759600-140761200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:140759600-140761200	Weak transcription	HSMMtube	muscle
34	chr6:140759600-140762000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:140759600-140762400	Weak transcription	Ovary	ovary
36	chr6:140759600-140767000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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