Variant report

Variant	rs72978093
Chromosome Location	chr4:172178052-172178053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs72976027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976041	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72987124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72987129	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72987144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv461836	chr4:171963233-172494233	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv596169	chr4:171963233-172494233	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1016836	chr4:171982072-172496279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv537355	chr4:171982072-172496279	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1028209	chr4:172164170-172296898	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3503858	chr4:172164271-172188649	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3503859	chr4:172164271-172188649	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172177200-172180200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:172177800-172178200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:172177800-172178400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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