Variant report

Variant	rs72987144
Chromosome Location	chr4:172158379-172158380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs72976027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72976041	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72987124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72987129	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv461836	chr4:171963233-172494233	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv596169	chr4:171963233-172494233	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1016836	chr4:171982072-172496279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv537355	chr4:171982072-172496279	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172155400-172160800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr4:172157600-172158800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:172158000-172159200	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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