Variant report

Variant	rs72978515
Chromosome Location	chr6:54970590-54970591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10440849	0.86[EUR][1000 genomes]
rs5011191	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56003919	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59419160	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6901139	0.89[EUR][1000 genomes]
rs72957255	0.81[EUR][1000 genomes]
rs72970757	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72978508	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7741358	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7761418	0.87[EUR][1000 genomes]
rs7767652	0.89[EUR][1000 genomes]
rs9464190	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9475164	0.85[EUR][1000 genomes]
rs9475165	0.83[EUR][1000 genomes]
rs9475166	0.89[EUR][1000 genomes]
rs9475168	0.87[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54964600-54973000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:54965000-54971000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:54965400-54971000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:54965800-54971000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:54966400-54971000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:54966400-54973200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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