Variant report

Variant	rs72978526
Chromosome Location	chr3:53687245-53687246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs33970402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55641883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55881044	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58036565	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58236730	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6765947	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967878	1.00[AMR][1000 genomes]
rs72978521	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978524	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978531	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978534	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978536	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73842064	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7633188	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53676800-53688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:53677600-53700000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:53683200-53744200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:53684200-53692200	Weak transcription	Right Atrium	heart
5	chr3:53684800-53698600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:53685400-53690000	Weak transcription	Fetal Brain Male	brain
7	chr3:53685800-53695800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:53686000-53688800	Strong transcription	Fetal Lung	lung
9	chr3:53686600-53687400	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr3:53687000-53687400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
11	chr3:53687000-53688000	ZNF genes & repeats	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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