Variant report

Variant	rs72978536
Chromosome Location	chr3:53694519-53694520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs33970402	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55641883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55881044	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58036565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58236730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6765947	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967878	1.00[AMR][1000 genomes]
rs72978521	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978526	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978528	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978531	1.00[AMR][1000 genomes]
rs72978534	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73842064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7633188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53677600-53700000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53683200-53744200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:53684800-53698600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:53685800-53695800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:53689600-53707400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:53692000-53707600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:53692600-53694600	Weak transcription	Fetal Stomach	stomach
8	chr3:53693000-53694800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:53693600-53695000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:53693600-53697600	ZNF genes & repeats	Liver	Liver
11	chr3:53694200-53695800	Genic enhancers	Fetal Lung	lung
12	chr3:53694200-53699000	Strong transcription	Fetal Intestine Small	intestine
13	chr3:53694200-53699200	Strong transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:53694200-53700400	Strong transcription	Fetal Intestine Large	intestine
15	chr3:53694400-53694800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:53694400-53701000	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links