Variant report

Variant	rs72978798
Chromosome Location	chr3:136731037-136731038
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:136471274..136473260-chr3:136730800..136734438,3	MCF-7	breast:
2	chr3:136467223..136474337-chr3:136727110..136735930,17	K562	blood:
3	chr3:136469703..136474003-chr3:136727974..136735265,9	MCF-7	breast:
4	chr3:136467223..136474007-chr3:136729764..136735930,11	K562	blood:

Variant related genes	Relation type
ENSG00000261758	Chromatin interaction
ENSG00000118007	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72978727	1.00[AFR][1000 genomes]
rs72978743	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877534	chr3:136676303-136765859	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136703800-136732400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:136713600-136732800	Weak transcription	Primary T cells from cord blood	blood
3	chr3:136715200-136733000	Weak transcription	Left Ventricle	heart
4	chr3:136720400-136732400	Weak transcription	Hela-S3	cervix
5	chr3:136723800-136732400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:136726000-136732800	Enhancers	Fetal Thymus	thymus
7	chr3:136726600-136732600	Weak transcription	Placenta	Placenta
8	chr3:136727000-136733000	Weak transcription	Fetal Stomach	stomach
9	chr3:136727400-136732600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:136727600-136731600	Enhancers	Thymus	Thymus
11	chr3:136728000-136733000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:136728000-136733000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:136728200-136732400	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:136728400-136732400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:136728800-136732600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr3:136729000-136732600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:136729200-136732600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:136729600-136732800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:136729800-136733000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:136730000-136733000	Weak transcription	Esophagus	oesophagus
21	chr3:136730200-136731200	Genic enhancers	NHEK	skin
22	chr3:136730200-136731600	Enhancers	Fetal Muscle Leg	muscle
23	chr3:136730200-136732800	Enhancers	NHDF-Ad	bronchial
24	chr3:136730200-136733400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:136730400-136731200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr3:136730400-136731400	Enhancers	Fetal Muscle Trunk	muscle
27	chr3:136730400-136732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:136730400-136732600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:136730600-136731400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr3:136730600-136731600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:136730600-136731600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:136730800-136731200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:136730800-136731600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:136730800-136731600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr3:136730800-136731800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:136730800-136731800	Enhancers	HSMM	muscle
37	chr3:136730800-136731800	Enhancers	NH-A	brain
38	chr3:136730800-136731800	Enhancers	NHLF	lung
39	chr3:136730800-136732000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:136730800-136732400	Weak transcription	HepG2	liver
41	chr3:136730800-136732800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:136731000-136731200	Flanking Active TSS	Osteobl	bone
43	chr3:136731000-136731400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:136731000-136731400	Enhancers	HMEC	breast
45	chr3:136731000-136731400	Enhancers	HSMMtube	muscle
46	chr3:136731000-136731600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:136731000-136731800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:136731000-136732000	Enhancers	Adipose Nuclei	Adipose
49	chr3:136731000-136733800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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