Variant report

Variant	rs729839
Chromosome Location	chr3:53632113-53632114
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3774469	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs3774471	0.95[ASN][1000 genomes]
rs3821851	0.84[JPT][hapmap]
rs6445588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843922	0.92[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
2	chr3:53623600-53637200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:53628200-53632600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:53630800-53632200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:53631200-53632800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:53631400-53632400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:53631400-53632600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:53631600-53632200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:53631600-53632200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:53631800-53632200	Enhancers	Fetal Lung	lung
11	chr3:53631800-53632400	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:53631800-53632400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:53631800-53636800	Weak transcription	Fetal Intestine Small	intestine
14	chr3:53632000-53633600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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