Variant report

Variant	rs9843922
Chromosome Location	chr3:53630998-53630999
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11918955	0.86[CHB][hapmap]
rs11927005	0.86[ASN][1000 genomes]
rs1460115	0.86[CHB][hapmap]
rs3774463	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3774468	0.92[CHB][hapmap];0.92[JPT][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3774473	0.92[CHB][hapmap]
rs3774474	0.86[CHB][hapmap]
rs6445588	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs729839	0.92[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
2	chr3:53623200-53631800	Strong transcription	Fetal Intestine Small	intestine
3	chr3:53623600-53637200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:53623800-53631000	Strong transcription	Fetal Intestine Large	intestine
5	chr3:53626600-53631800	Weak transcription	Fetal Lung	lung
6	chr3:53628200-53632600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:53630800-53631400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:53630800-53632200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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