Variant report

Variant	rs11927005
Chromosome Location	chr3:53626960-53626961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3774463	0.97[ASN][1000 genomes]
rs3774468	0.84[ASN][1000 genomes]
rs3774473	0.82[ASN][1000 genomes]
rs62251907	0.83[ASN][1000 genomes]
rs9843922	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
2	chr3:53616800-53627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:53619400-53630800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:53623200-53631800	Strong transcription	Fetal Intestine Small	intestine
5	chr3:53623600-53637200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:53623800-53631000	Strong transcription	Fetal Intestine Large	intestine
7	chr3:53626200-53627600	Weak transcription	Lung	lung
8	chr3:53626400-53627600	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:53626600-53631800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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