Variant report

Variant	rs3774463
Chromosome Location	chr3:53623102-53623103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11927005	0.97[ASN][1000 genomes]
rs3774468	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs3774473	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs3774474	0.85[CHB][hapmap]
rs62251907	0.80[ASN][1000 genomes]
rs9843922	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
2	chr3:53616800-53627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:53617600-53623800	Weak transcription	Fetal Lung	lung
4	chr3:53618200-53623800	Weak transcription	Fetal Intestine Large	intestine
5	chr3:53619400-53624800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:53619400-53630800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:53620400-53626000	Weak transcription	Lung	lung
8	chr3:53622200-53623600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:53622400-53623200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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