Variant report

Variant	rs72984889
Chromosome Location	chr11:73861251-73861252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:62606912..62608550-chr11:73859737..73862653,2	MCF-7	breast:
2	chr11:73699969..73700866-chr11:73860687..73861255,2	MCF-7	breast:
3	chr11:73858512..73862576-chr11:73879073..73884065,4	K562	blood:

Variant related genes	Relation type
ENSG00000214517	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17132707	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72984839	1.00[AFR][1000 genomes]
rs72984861	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984896	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986741	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
2	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
3	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73825800-73878600	Weak transcription	Fetal Brain Male	brain
6	chr11:73829400-73873800	Weak transcription	Right Ventricle	heart
7	chr11:73843400-73867200	Weak transcription	Fetal Stomach	stomach
8	chr11:73844800-73880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr11:73847200-73869800	Weak transcription	Fetal Kidney	kidney
10	chr11:73847800-73866800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:73847800-73870800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:73847800-73875000	Weak transcription	Fetal Lung	lung
13	chr11:73847800-73875200	Weak transcription	Left Ventricle	heart
14	chr11:73847800-73880800	Weak transcription	Spleen	Spleen
15	chr11:73848000-73873000	Weak transcription	GM12878-XiMat	blood
16	chr11:73849600-73873800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:73849600-73875000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:73850200-73865600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:73850200-73870800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr11:73850200-73879600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:73850600-73864000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:73850600-73869800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:73850800-73863400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:73850800-73864000	Weak transcription	Fetal Intestine Small	intestine
25	chr11:73850800-73865200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:73850800-73865200	Weak transcription	Fetal Thymus	thymus
27	chr11:73850800-73865400	Weak transcription	Fetal Heart	heart
28	chr11:73850800-73866000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:73850800-73866400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:73850800-73866800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:73850800-73867200	Weak transcription	Thymus	Thymus
32	chr11:73850800-73867600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr11:73850800-73869000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr11:73850800-73869800	Weak transcription	Dnd41	blood
35	chr11:73850800-73870000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:73850800-73871000	Weak transcription	Liver	Liver
37	chr11:73850800-73872200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:73850800-73875400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:73850800-73875600	Weak transcription	Brain Germinal Matrix	brain
40	chr11:73851000-73871400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:73851400-73866000	Weak transcription	Primary T cells from cord blood	blood
42	chr11:73851400-73867200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:73852000-73877000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:73852600-73864400	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:73852600-73870000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:73852600-73873800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:73852800-73864000	Weak transcription	Fetal Muscle Leg	muscle
48	chr11:73852800-73864200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:73852800-73865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:73852800-73868800	Weak transcription	K562	blood

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