Variant report

Variant	rs72988199
Chromosome Location	chr2:141640426-141640427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72990112	1.00[EUR][1000 genomes]
rs72990131	1.00[AFR][1000 genomes]
rs72990134	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141639800-141641000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:141639800-141641200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:141640000-141640800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:141640000-141641200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:141640200-141640800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:141640200-141640800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr2:141640200-141640800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:141640200-141640800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:141640200-141640800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:141640200-141641600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:141640400-141641000	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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