Variant report

Variant	rs72990134
Chromosome Location	chr2:141663192-141663193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72988199	1.00[AFR][1000 genomes]
rs72990131	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141662200-141663400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr2:141662200-141663600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:141662200-141663800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr2:141662400-141663200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr2:141662400-141663800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:141662600-141663800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:141662600-141663800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:141662800-141663200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr2:141662800-141663200	Enhancers	Fetal Heart	heart
10	chr2:141662800-141663400	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr2:141662800-141663400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:141662800-141663400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:141663000-141663800	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links