Variant report

Variant	rs72989160
Chromosome Location	chr3:136591515-136591516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:136580660..136583127-chr3:136589385..136592191,4	K562	blood:
2	chr3:136578448..136581953-chr3:136588575..136593594,6	MCF-7	breast:
3	chr3:136580535..136582500-chr3:136588288..136592198,4	K562	blood:

Variant related genes	Relation type
ENSG00000158092	Chromatin interaction
ENSG00000239213	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16844164	1.00[AMR][1000 genomes]
rs6809885	1.00[AMR][1000 genomes]
rs72978714	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72980758	1.00[AMR][1000 genomes]
rs72981371	0.86[AFR][1000 genomes]
rs72989129	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877530	chr3:136514310-136604697	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
2	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136582000-136592600	Weak transcription	Gastric	stomach
2	chr3:136582000-136601400	Weak transcription	Spleen	Spleen
3	chr3:136582200-136594000	Weak transcription	Esophagus	oesophagus
4	chr3:136582400-136593000	Weak transcription	Right Ventricle	heart
5	chr3:136582400-136594600	Weak transcription	Colonic Mucosa	Colon
6	chr3:136582400-136602600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:136582400-136612600	Weak transcription	Pancreas	Pancrea
8	chr3:136582600-136592200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:136582600-136592400	Weak transcription	Fetal Lung	lung
10	chr3:136582600-136592600	Weak transcription	HUVEC	blood vessel
11	chr3:136582600-136593200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:136582600-136593800	Weak transcription	Brain Substantia Nigra	brain
13	chr3:136582600-136595000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:136582600-136595600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:136582600-136601400	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:136582600-136602000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:136582600-136604200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:136582600-136604200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:136582600-136612600	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:136582600-136612600	Weak transcription	NH-A	brain
21	chr3:136582600-136612600	Weak transcription	Osteobl	bone
22	chr3:136582800-136592400	Weak transcription	Small Intestine	intestine
23	chr3:136582800-136593200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:136582800-136595000	Weak transcription	NHLF	lung
25	chr3:136582800-136604200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:136582800-136609400	Weak transcription	NHEK	skin
27	chr3:136582800-136609600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:136582800-136609800	Weak transcription	HMEC	breast
29	chr3:136582800-136612800	Weak transcription	HSMM	muscle
30	chr3:136584800-136591600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:136585800-136592600	Weak transcription	Psoas Muscle	Psoas
32	chr3:136586200-136593000	Strong transcription	Fetal Thymus	thymus
33	chr3:136586400-136593800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:136587400-136592600	Strong transcription	Primary T cells from cord blood	blood
35	chr3:136587800-136591800	Strong transcription	Dnd41	blood
36	chr3:136587800-136593200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:136588000-136593600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:136588000-136612600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:136588000-136612600	Weak transcription	Adipose Nuclei	Adipose
40	chr3:136588000-136612600	Weak transcription	Ovary	ovary
41	chr3:136588400-136591600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr3:136588400-136593200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr3:136588400-136601800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:136588400-136604200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr3:136588400-136608800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:136588400-136609600	Weak transcription	Liver	Liver
47	chr3:136588600-136593000	Weak transcription	Placenta	Placenta
48	chr3:136588600-136595200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:136588600-136612600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr3:136588800-136592000	Weak transcription	HepG2	liver

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