Variant report
| Variant | rs7299112 |
|---|---|
| Chromosome Location | chr12:75045907-75045908 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:74930398..74932060-chr12:75044230..75046232,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253719 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs55831933 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56163484 | 1.00[AMR][1000 genomes] |
| rs7295914 | 0.88[YRI][hapmap] |
| rs7299181 | 0.93[YRI][hapmap] |
| rs74106016 | 1.00[AMR][1000 genomes] |
| rs74106043 | 1.00[AMR][1000 genomes] |
| rs74106044 | 1.00[AMR][1000 genomes] |
| rs74106045 | 1.00[AMR][1000 genomes] |
| rs74106046 | 1.00[AMR][1000 genomes] |
| rs74106048 | 1.00[AMR][1000 genomes] |
| rs7956761 | 1.00[AMR][1000 genomes] |
| rs7968457 | 1.00[AMR][1000 genomes] |
| rs7973277 | 0.81[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899297 | chr12:75045728-75169675 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899298 | chr12:75045728-75173289 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
