Variant report

Variant	rs72993787
Chromosome Location	chr3:142622655-142622656
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16852779	0.93[ASN][1000 genomes]
rs16852811	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6783831	0.98[AFR][1000 genomes]
rs6783921	0.98[AFR][1000 genomes]
rs72997693	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72997694	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7635853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv437342	chr3:142605233-142622834	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv437343	chr3:142607487-142622834	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142615600-142623400	Weak transcription	NHDF-Ad	bronchial
2	chr3:142618000-142623200	Weak transcription	Left Ventricle	heart
3	chr3:142618000-142623400	Weak transcription	Right Atrium	heart
4	chr3:142618000-142628000	Weak transcription	Aorta	Aorta
5	chr3:142621800-142623200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:142622000-142623400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:142622000-142623400	Weak transcription	NH-A	brain
8	chr3:142622000-142623400	Weak transcription	Osteobl	bone
9	chr3:142622400-142622800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:142622600-142624600	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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