Variant report

Variant	rs72994953
Chromosome Location	chr11:106656006-106656007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10890587	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12222561	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61905190	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994949	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994951	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106627000-106656800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:106641200-106657000	Weak transcription	Fetal Brain Male	brain
3	chr11:106647600-106656600	Weak transcription	Fetal Lung	lung
4	chr11:106650800-106663800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:106652000-106661000	Weak transcription	Pancreas	Pancrea
6	chr11:106655800-106656400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:106656000-106656200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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