Variant report

Variant	rs72996363
Chromosome Location	chr11:106886426-106886427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1531073	1.00[ASN][1000 genomes]
rs17106108	1.00[ASN][1000 genomes]
rs17106293	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984365	1.00[ASN][1000 genomes]
rs72986343	1.00[ASN][1000 genomes]
rs72990353	1.00[ASN][1000 genomes]
rs72990360	1.00[ASN][1000 genomes]
rs72994145	1.00[ASN][1000 genomes]
rs72994149	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72996333	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72996337	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930222	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106885400-106886800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:106885400-106887400	Active TSS	Fetal Brain Female	brain
3	chr11:106885400-106887800	Enhancers	Fetal Heart	heart
4	chr11:106885600-106886800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:106885600-106887800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:106885800-106886800	Active TSS	Brain Germinal Matrix	brain
7	chr11:106885800-106890000	Active TSS	Brain Anterior Caudate	brain
8	chr11:106886200-106888000	Weak transcription	NH-A	brain
9	chr11:106886400-106886800	Active TSS	Fetal Lung	lung
10	chr11:106886400-106887000	Active TSS	Fetal Brain Male	brain
11	chr11:106886400-106888200	Active TSS	Psoas Muscle	Psoas
12	chr11:106886400-106889400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
13	chr11:106886400-106889600	Bivalent/Poised TSS	Left Ventricle	heart
14	chr11:106886400-106890000	Active TSS	Brain Hippocampus Middle	brain
15	chr11:106886400-106890000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr11:106886400-106890000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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