Variant report

Variant	rs72999175
Chromosome Location	chr3:146031844-146031845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:56268200..56270406-chr3:146031191..146033715,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72999169	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3410778	chr3:146017303-146060390	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146029000-146032800	Weak transcription	Liver	Liver
2	chr3:146030800-146033000	Enhancers	NHLF	lung
3	chr3:146030800-146033600	Enhancers	HUVEC	blood vessel
4	chr3:146031000-146032000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:146031000-146032400	Enhancers	HSMM	muscle
6	chr3:146031000-146033400	Enhancers	Osteobl	bone
7	chr3:146031200-146032200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:146031200-146032400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:146031200-146032400	Enhancers	NHEK	skin
10	chr3:146031200-146033600	Enhancers	NH-A	brain
11	chr3:146031400-146032000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:146031400-146032200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:146031400-146032400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:146031400-146033600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:146031600-146032000	Active TSS	HSMMtube	muscle
16	chr3:146031600-146032400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:146031800-146032000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:146031800-146032000	Flanking Active TSS	HMEC	breast
19	chr3:146031800-146032200	Enhancers	A549	lung
20	chr3:146031800-146032800	Weak transcription	Stomach Mucosa	stomach
21	chr3:146031800-146032800	Enhancers	NHDF-Ad	bronchial
22	chr3:146031800-146033800	Enhancers	Hela-S3	cervix
23	chr3:146031800-146044200	Weak transcription	Aorta	Aorta

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