Variant report

Variant	rs73000681
Chromosome Location	chr11:108980449-108980450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73000680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73000683	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73000688	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73000691	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73000695	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108977600-108983600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:108977800-108982600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:108977800-108982600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:108977800-108982800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:108977800-108982800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:108977800-108983000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:108977800-108983000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:108977800-108983000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:108977800-108983800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:108979800-108980800	Flanking Active TSS	Fetal Heart	heart
11	chr11:108979800-108981000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:108979800-108981400	Enhancers	HepG2	liver
13	chr11:108980000-108981200	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:108980000-108981400	Enhancers	Fetal Kidney	kidney
15	chr11:108980200-108980800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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