Variant report

Variant	rs73001332
Chromosome Location	chr3:150274822-150274823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150273199..150278590-chr3:150279428..150284262,5	K562	blood:
2	chr3:150273466..150276181-chr3:150479537..150481444,2	K562	blood:
3	chr3:150274748..150276257-chr3:150319838..150322545,2	MCF-7	breast:
4	chr3:150274346..150276265-chr3:150277986..150280973,2	K562	blood:
5	chr3:150259312..150261315-chr3:150274243..150276592,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000244265	Chromatin interaction
ENSG00000198843	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11548666	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11921309	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922033	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11924919	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927175	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927998	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11929205	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107730	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17214539	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17440940	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1915945	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965473	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030530	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293150	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293151	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55707430	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55723846	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56208302	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217437	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59885545	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60142519	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61019785	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61667461	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001317	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001341	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001347	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001362	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001363	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001365	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003042	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7430992	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650013	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150265200-150299400	Weak transcription	Esophagus	oesophagus
2	chr3:150265200-150302800	Weak transcription	Gastric	stomach
3	chr3:150265400-150279600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:150265400-150305800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:150265600-150284600	Weak transcription	Right Ventricle	heart
6	chr3:150265600-150293400	Weak transcription	Aorta	Aorta
7	chr3:150265600-150294000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:150265600-150304200	Weak transcription	Fetal Brain Male	brain
9	chr3:150265600-150320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:150265600-150320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:150266000-150284400	Weak transcription	Brain Anterior Caudate	brain
12	chr3:150266000-150285000	Weak transcription	Colonic Mucosa	Colon
13	chr3:150266000-150304600	Weak transcription	Fetal Heart	heart
14	chr3:150266000-150307600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:150266200-150277200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:150266200-150280800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:150266400-150293400	Weak transcription	Psoas Muscle	Psoas
18	chr3:150266400-150302200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:150267200-150278400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:150267400-150275800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:150267600-150277000	Strong transcription	HSMM	muscle
22	chr3:150267600-150278600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:150268000-150276600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:150268200-150282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:150268400-150276400	Strong transcription	Duodenum Mucosa	Duodenum
26	chr3:150268400-150278200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:150268600-150277000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr3:150268600-150304000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr3:150269400-150275600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:150269400-150284000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr3:150269600-150279000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:150269800-150276200	Strong transcription	A549	lung
33	chr3:150269800-150276400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:150269800-150278600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:150269800-150278800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:150270000-150275000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:150270400-150276600	Strong transcription	Primary B cells from cord blood	blood
38	chr3:150271000-150275800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:150271200-150275800	Strong transcription	Fetal Brain Female	brain
40	chr3:150271400-150277000	Weak transcription	Fetal Intestine Small	intestine
41	chr3:150272400-150280400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:150272400-150284600	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:150272400-150293800	Weak transcription	Small Intestine	intestine
44	chr3:150272600-150275400	Weak transcription	Brain Angular Gyrus	brain
45	chr3:150272600-150282000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:150272600-150283800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr3:150272800-150275800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:150272800-150277800	Weak transcription	NHDF-Ad	bronchial
49	chr3:150272800-150280200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:150272800-150283000	Weak transcription	Colon Smooth Muscle	Colon

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