Variant report

Variant	rs73001347
Chromosome Location	chr3:150291605-150291606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150291427..150293718-chr3:150321291..150323523,2	MCF-7	breast:
2	chr3:150283998..150287154-chr3:150289329..150292174,4	K562	blood:
3	chr3:150257542..150259697-chr3:150290754..150292277,2	K562	blood:
4	chr3:150284261..150285937-chr3:150290145..150291661,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144895	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11548666	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11921309	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922033	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11924919	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927175	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927998	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11929205	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107730	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17214539	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17440940	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1915945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965473	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030530	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293150	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55707430	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55723846	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56208302	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59885545	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60142519	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61019785	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61667461	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001317	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001332	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001362	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001363	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001365	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003042	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7430992	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650013	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150265200-150299400	Weak transcription	Esophagus	oesophagus
2	chr3:150265200-150302800	Weak transcription	Gastric	stomach
3	chr3:150265400-150305800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:150265600-150293400	Weak transcription	Aorta	Aorta
5	chr3:150265600-150294000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:150265600-150304200	Weak transcription	Fetal Brain Male	brain
7	chr3:150265600-150320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:150265600-150320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:150266000-150304600	Weak transcription	Fetal Heart	heart
10	chr3:150266000-150307600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:150266400-150293400	Weak transcription	Psoas Muscle	Psoas
12	chr3:150266400-150302200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:150268600-150304000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr3:150272400-150293800	Weak transcription	Small Intestine	intestine
15	chr3:150274000-150293400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:150274000-150293600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:150274000-150303000	Weak transcription	Pancreas	Pancrea
18	chr3:150274200-150293600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:150274400-150293400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:150274800-150300600	Weak transcription	Stomach Mucosa	stomach
21	chr3:150277200-150305200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:150277400-150293800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr3:150278000-150306800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:150278200-150304800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr3:150278400-150306400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:150279400-150303800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:150280000-150304800	Strong transcription	Fetal Thymus	thymus
28	chr3:150280200-150292600	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr3:150280200-150304400	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:150280200-150304600	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:150280200-150304800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:150280200-150305000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:150280200-150307800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:150280400-150292400	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:150280800-150300400	Strong transcription	Liver	Liver
36	chr3:150281400-150303800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:150282400-150295600	Strong transcription	Placenta	Placenta
38	chr3:150282800-150292000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:150283200-150305200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr3:150283400-150292000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr3:150283400-150293600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:150284200-150293800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:150285400-150293600	Weak transcription	Right Ventricle	heart
44	chr3:150285600-150293600	Weak transcription	Brain Angular Gyrus	brain
45	chr3:150286400-150292000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:150286400-150292000	Strong transcription	Fetal Intestine Small	intestine
47	chr3:150286400-150292000	Strong transcription	Fetal Stomach	stomach
48	chr3:150286400-150292000	Weak transcription	HMEC	breast
49	chr3:150286400-150292200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr3:150286600-150293200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links