Variant report

Variant	rs73004969
Chromosome Location	chr1:156078550-156078551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:156030474..156032392-chr1:156077190..156079777,2	MCF-7	breast:
2	chr1:155902776..155905065-chr1:156076858..156079301,2	K562	blood:
3	chr1:156060305..156061119-chr1:156078032..156078700,2	K562	blood:

Variant related genes	Relation type
ENSG00000132698	Chromatin interaction
ENSG00000132680	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1003725	1.00[AMR][1000 genomes]
rs57875392	1.00[AMR][1000 genomes]
rs60291493	1.00[AMR][1000 genomes]
rs61290992	1.00[AMR][1000 genomes]
rs6685797	1.00[AMR][1000 genomes]
rs6689656	1.00[AMR][1000 genomes]
rs73001080	1.00[AMR][1000 genomes]
rs73001081	1.00[AMR][1000 genomes]
rs73001083	1.00[AMR][1000 genomes]
rs73001085	1.00[AMR][1000 genomes]
rs73001088	1.00[AMR][1000 genomes]
rs73001099	1.00[AMR][1000 genomes]
rs73002905	1.00[AMR][1000 genomes]
rs73002907	1.00[AMR][1000 genomes]
rs73002917	1.00[AMR][1000 genomes]
rs73002929	1.00[AMR][1000 genomes]
rs73002930	1.00[AMR][1000 genomes]
rs7512584	1.00[AMR][1000 genomes]
rs7516232	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:156070200-156078600	Enhancers	Left Ventricle	heart
2	chr1:156075200-156083800	Weak transcription	Gastric	stomach
3	chr1:156076200-156079600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:156076200-156081200	Weak transcription	Esophagus	oesophagus
5	chr1:156076400-156081400	Weak transcription	Lung	lung
6	chr1:156076600-156079400	Enhancers	Psoas Muscle	Psoas
7	chr1:156076800-156079000	Weak transcription	Ovary	ovary
8	chr1:156076800-156079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:156076800-156079400	Enhancers	NHDF-Ad	bronchial
10	chr1:156077000-156079600	Enhancers	Adipose Nuclei	Adipose
11	chr1:156077000-156081600	Weak transcription	HSMMtube	muscle
12	chr1:156077000-156081600	Weak transcription	NHEK	skin
13	chr1:156077000-156081800	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:156077000-156082000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:156077000-156082000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:156077000-156082200	Weak transcription	HUVEC	blood vessel
17	chr1:156077000-156083200	Weak transcription	Fetal Brain Female	brain
18	chr1:156077000-156083200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:156077000-156083800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:156077000-156083800	Weak transcription	Spleen	Spleen
21	chr1:156077200-156079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:156077200-156079000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:156077200-156081200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:156077200-156081200	Weak transcription	Osteobl	bone
25	chr1:156077200-156081400	Weak transcription	Colonic Mucosa	Colon
26	chr1:156077200-156081400	Weak transcription	HSMM	muscle
27	chr1:156077200-156081400	Weak transcription	NHLF	lung
28	chr1:156077200-156081600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr1:156077200-156081600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:156077200-156081600	Weak transcription	HMEC	breast
31	chr1:156077200-156081800	Weak transcription	Brain Germinal Matrix	brain
32	chr1:156077200-156082000	Weak transcription	Brain Angular Gyrus	brain
33	chr1:156077200-156082000	Weak transcription	Brain Anterior Caudate	brain
34	chr1:156077200-156082000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:156077200-156082200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:156077200-156082400	Weak transcription	Fetal Intestine Large	intestine
37	chr1:156077200-156083600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:156077200-156083600	Weak transcription	Fetal Lung	lung
39	chr1:156077200-156084000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr1:156077400-156078600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr1:156077400-156080200	Enhancers	A549	lung
42	chr1:156077400-156080800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:156077400-156081200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:156077400-156081200	Weak transcription	NH-A	brain
45	chr1:156077400-156081400	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:156077400-156081600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:156077400-156081600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr1:156077400-156081600	Weak transcription	Right Atrium	heart
49	chr1:156077400-156081800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr1:156077400-156081800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links