Variant report

Variant	rs7512584
Chromosome Location	chr1:156158981-156158982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:156158504..156171493-chr1:156177126..156185694,25	K562	blood:
2	chr1:156152850..156159268-chr1:156159767..156165310,8	K562	blood:
3	chr1:156155268..156160486-chr1:156161889..156165382,6	MCF-7	breast:
4	chr1:156157768..156159679-chr1:156159767..156161270,2	K562	blood:
5	chr1:156154724..156160992-chr1:156161585..156165907,6	K562	blood:

Variant related genes	Relation type
ENSG00000260238	Chromatin interaction
ENSG00000160783	Chromatin interaction
ENSG00000252236	Chromatin interaction
ENSG00000160785	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1003725	1.00[AMR][1000 genomes]
rs57162247	1.00[AMR][1000 genomes]
rs59417251	1.00[AMR][1000 genomes]
rs6685797	1.00[AMR][1000 genomes]
rs6689656	1.00[AMR][1000 genomes]
rs73004969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases
2	nsv1011302	chr1:156081561-156532624	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	380 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:156147000-156159000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:156148400-156161000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:156148600-156161200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:156148600-156163000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:156148600-156163000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:156149000-156161400	Weak transcription	A549	lung
7	chr1:156152400-156162800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:156152400-156163800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:156154600-156163000	Weak transcription	Pancreas	Pancrea
10	chr1:156154800-156163000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:156154800-156163000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:156155000-156161400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:156155400-156159400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:156155400-156163000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:156156000-156163000	Weak transcription	Spleen	Spleen
16	chr1:156156400-156160000	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr1:156156600-156161000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:156156800-156159000	Weak transcription	HepG2	liver
19	chr1:156158000-156162800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:156158000-156163000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:156158600-156159000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr1:156158600-156163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:156158800-156159400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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