Variant report

Variant	rs7300695
Chromosome Location	chr12:121197629-121197630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACADS-1	chr12:121197146-121197844	expReg_chr12_11530_+

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1027556	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1039302	1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10431387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10437837	0.81[JPT][hapmap]
rs10437838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10744754	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10774568	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10774569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10774570	1.00[CEU][hapmap]
rs10774571	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10849782	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10849783	0.85[EUR][1000 genomes]
rs10849785	0.88[JPT][hapmap]
rs10849786	1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10849787	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10849788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849789	0.88[JPT][hapmap]
rs10849790	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10849792	0.82[JPT][hapmap]
rs10849793	0.83[ASN][1000 genomes]
rs10849794	1.00[CEU][hapmap]
rs10849798	0.83[JPT][hapmap]
rs10849800	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10849805	0.88[CEU][hapmap]
rs10849808	0.88[JPT][hapmap]
rs10849810	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10849811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs10849814	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs11065259	1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11065266	0.91[EUR][1000 genomes]
rs11065272	0.81[ASN][1000 genomes]
rs11065298	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11065322	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11833706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2393718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2393725	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3213568	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3213569	1.00[CEU][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs3213571	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3809314	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4638383	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs593429	0.82[ASN][1000 genomes]
rs6489780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6489781	0.83[ASN][1000 genomes]
rs6489782	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6490303	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7135147	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7135426	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7139145	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs715319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7298639	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73229114	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7960784	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7965332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7977343	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1041153	chr12:121171986-121208826	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv560438	chr12:121194565-121352206	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121177800-121197800	Weak transcription	Gastric	stomach
2	chr12:121186400-121198400	Weak transcription	Right Ventricle	heart
3	chr12:121190400-121197800	Weak transcription	Right Atrium	heart
4	chr12:121193000-121198400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:121193800-121198200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr12:121194000-121200800	Weak transcription	HepG2	liver
7	chr12:121194200-121197800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:121194200-121197800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:121194200-121202200	Weak transcription	K562	blood
10	chr12:121194800-121198200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr12:121194800-121198800	Weak transcription	A549	lung
12	chr12:121195000-121197800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:121195000-121197800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr12:121195000-121201200	Weak transcription	Small Intestine	intestine
15	chr12:121195200-121197800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:121195200-121197800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr12:121195200-121197800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr12:121195200-121200000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr12:121195400-121197800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:121195400-121198000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:121195400-121198400	Weak transcription	Dnd41	blood
22	chr12:121195400-121198800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:121195600-121197800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:121195600-121198400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:121195600-121198600	Weak transcription	Colonic Mucosa	Colon
26	chr12:121195600-121198800	Weak transcription	NHLF	lung
27	chr12:121195600-121199200	Weak transcription	NHDF-Ad	bronchial
28	chr12:121195600-121204200	Weak transcription	Stomach Mucosa	stomach
29	chr12:121195600-121207200	Strong transcription	Brain Germinal Matrix	brain
30	chr12:121195800-121197800	Weak transcription	Lung	lung
31	chr12:121196000-121197800	Weak transcription	Liver	Liver
32	chr12:121196000-121197800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr12:121196000-121198400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr12:121196000-121198600	Weak transcription	Brain Angular Gyrus	brain
35	chr12:121196000-121201000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr12:121196200-121198000	Weak transcription	Adipose Nuclei	Adipose
37	chr12:121196200-121199200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr12:121196200-121199400	Weak transcription	Aorta	Aorta
39	chr12:121196200-121201000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr12:121196200-121201000	Weak transcription	Osteobl	bone
41	chr12:121196400-121198600	Weak transcription	Colon Smooth Muscle	Colon
42	chr12:121196400-121198600	Weak transcription	HSMMtube	muscle
43	chr12:121196400-121199000	Weak transcription	HMEC	breast
44	chr12:121196400-121207000	Strong transcription	Fetal Brain Female	brain
45	chr12:121196600-121197800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr12:121196600-121198000	Genic enhancers	Fetal Muscle Leg	muscle
47	chr12:121196600-121198200	Enhancers	Fetal Heart	heart
48	chr12:121196600-121199000	Weak transcription	Hela-S3	cervix
49	chr12:121196800-121198000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr12:121196800-121198000	Enhancers	HUES6 Cell Line	embryonic stem cell

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