Variant report

Variant	rs73010649
Chromosome Location	chr1:156359008-156359009
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:156351422..156354459-chr1:156356280..156359051,3	MCF-7	breast:
2	chr1:156306263..156308908-chr1:156356980..156360261,3	K562	blood:
3	chr1:156351935..156356814-chr1:156357116..156361846,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163468	Chromatin interaction
ENSG00000132677	Chromatin interaction
ENSG00000163467	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs72994617	1.00[AMR][1000 genomes]
rs73010652	1.00[AMR][1000 genomes]
rs73010655	1.00[AMR][1000 genomes]
rs73010663	1.00[AMR][1000 genomes]
rs73010667	1.00[AMR][1000 genomes]
rs73010669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases
2	nsv1011302	chr1:156081561-156532624	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	380 gene(s)	inside rSNPs	diseases
3	nsv915822	chr1:156226286-156651655	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	367 gene(s)	inside rSNPs	diseases
4	esv1793632	chr1:156338992-156366178	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
5	nsv1005335	chr1:156347358-156905648	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	395 gene(s)	inside rSNPs	diseases
6	nsv1004910	chr1:156347358-157258223	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	430 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:156357400-156359400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:156357400-156363000	Enhancers	Fetal Brain Male	brain
3	chr1:156357600-156359200	Bivalent Enhancer	Fetal Intestine Small	intestine
4	chr1:156357600-156359600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:156357600-156362200	Flanking Active TSS	Brain Germinal Matrix	brain
6	chr1:156358000-156363600	Enhancers	Brain Substantia Nigra	brain
7	chr1:156358200-156359200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:156358600-156359200	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr1:156358600-156359800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:156358600-156362000	Enhancers	Brain Angular Gyrus	brain
11	chr1:156358600-156367600	Weak transcription	Right Atrium	heart
12	chr1:156358800-156359200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr1:156358800-156359400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr1:156358800-156359400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
15	chr1:156358800-156359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:156358800-156359800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:156358800-156360000	Enhancers	Fetal Brain Female	brain
18	chr1:156358800-156360800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:156358800-156361600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:156358800-156362000	Enhancers	Brain Cingulate Gyrus	brain
21	chr1:156358800-156362000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:156358800-156362200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
23	chr1:156358800-156364600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:156359000-156359200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
25	chr1:156359000-156359200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:156359000-156359200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr1:156359000-156359400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:156359000-156359400	Flanking Bivalent TSS/Enh	HepG2	liver
29	chr1:156359000-156359800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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