Variant report

Variant	rs73010652
Chromosome Location	chr1:156361116-156361117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:156360747..156363577-chr1:156397378..156399578,3	K562	blood:
2	chr1:156353973..156356969-chr1:156359143..156362036,2	MCF-7	breast:
3	chr1:156360548..156363441-chr1:156373892..156375750,2	K562	blood:
4	chr1:156355128..156357826-chr1:156359937..156361792,2	K562	blood:
5	chr1:156359850..156362270-chr1:156362434..156364882,2	MCF-7	breast:
6	chr1:156359922..156361575-chr1:156390944..156393006,2	K562	blood:
7	chr1:156359136..156362135-chr1:156391465..156393783,2	MCF-7	breast:
8	chr1:156360686..156364321-chr1:156408945..156411695,3	K562	blood:
9	chr1:156351935..156356814-chr1:156357116..156361846,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RHBG-1	chr1:156359954-156365401	ENSG00000237390

No data

Variant related genes	Relation type
ENSG00000132677	Chromatin interaction
ENSG00000125462	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs72994617	1.00[AMR][1000 genomes]
rs73010649	1.00[AMR][1000 genomes]
rs73010655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010663	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases
2	nsv1011302	chr1:156081561-156532624	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	380 gene(s)	inside rSNPs	diseases
3	nsv915822	chr1:156226286-156651655	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	367 gene(s)	inside rSNPs	diseases
4	esv1793632	chr1:156338992-156366178	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
5	nsv1005335	chr1:156347358-156905648	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	395 gene(s)	inside rSNPs	diseases
6	nsv1004910	chr1:156347358-157258223	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	430 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:156357400-156363000	Enhancers	Fetal Brain Male	brain
2	chr1:156357600-156362200	Flanking Active TSS	Brain Germinal Matrix	brain
3	chr1:156358000-156363600	Enhancers	Brain Substantia Nigra	brain
4	chr1:156358600-156362000	Enhancers	Brain Angular Gyrus	brain
5	chr1:156358600-156367600	Weak transcription	Right Atrium	heart
6	chr1:156358800-156361600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:156358800-156362000	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:156358800-156362000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:156358800-156362200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr1:156358800-156364600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr1:156359200-156363200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:156359400-156361400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:156359400-156362000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr1:156359600-156362600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
15	chr1:156359600-156363400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr1:156359600-156364400	Enhancers	Brain Hippocampus Middle	brain
17	chr1:156359800-156363600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:156359800-156364200	Enhancers	Brain Anterior Caudate	brain
19	chr1:156359800-156365000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:156360000-156361200	Flanking Active TSS	Fetal Brain Female	brain
21	chr1:156360200-156363400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:156360400-156361400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
23	chr1:156360400-156361600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:156360400-156362200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:156360400-156362200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:156360400-156362800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
27	chr1:156360600-156361400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr1:156360600-156363000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:156360800-156361600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:156360800-156362800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr1:156361000-156361400	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
32	chr1:156361000-156363200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links