Variant report

Variant	rs73012068
Chromosome Location	chr3:159817195-159817196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4680554	0.86[AFR][1000 genomes]
rs66550246	0.94[ASN][1000 genomes]
rs67548197	0.94[ASN][1000 genomes]
rs6778335	0.94[ASN][1000 genomes]
rs67813392	0.94[ASN][1000 genomes]
rs9828609	0.90[AFR][1000 genomes]
rs9866988	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159807000-159825000	Weak transcription	Pancreas	Pancrea
2	chr3:159816200-159817200	Enhancers	Stomach Mucosa	stomach
3	chr3:159816200-159818400	Enhancers	GM12878-XiMat	blood
4	chr3:159816400-159817800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:159816400-159817800	Enhancers	HepG2	liver
6	chr3:159816600-159818200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:159816800-159817200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:159816800-159817800	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:159817000-159817800	Enhancers	Primary B cells from peripheral blood	blood
10	chr3:159817000-159818000	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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