Variant report

Variant	rs9828609
Chromosome Location	chr3:159815883-159815884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12634498	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1580794	0.83[AMR][1000 genomes]
rs4680554	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680556	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6441291	0.81[AMR][1000 genomes]
rs6795264	0.80[EUR][1000 genomes]
rs73012068	0.90[AFR][1000 genomes]
rs937478	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9810636	0.80[EUR][1000 genomes]
rs9811184	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9820728	0.80[EUR][1000 genomes]
rs9826517	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9835257	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9847609	0.80[EUR][1000 genomes]
rs9847915	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9848879	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9866988	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9880855	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	esv3358384	chr3:159812458-159816056	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159807000-159825000	Weak transcription	Pancreas	Pancrea
2	chr3:159812800-159816400	Weak transcription	HepG2	liver
3	chr3:159815000-159816400	Enhancers	Esophagus	oesophagus
4	chr3:159815200-159817000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:159815600-159816000	Enhancers	Osteobl	bone
6	chr3:159815800-159816800	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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