Variant report

Variant	rs937478
Chromosome Location	chr3:159809454-159809455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12634498	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1580794	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4680554	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4680556	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441291	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6794509	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6795264	0.98[EUR][1000 genomes]
rs7624350	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9810636	0.98[EUR][1000 genomes]
rs9811184	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820728	0.96[EUR][1000 genomes]
rs9826517	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9828609	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9835257	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9847609	0.98[EUR][1000 genomes]
rs9847915	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9848879	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866988	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9880855	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	esv13734	chr3:159794041-159814966	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv819439	chr3:159800647-159815768	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159801000-159814600	Weak transcription	Gastric	stomach
2	chr3:159807000-159825000	Weak transcription	Pancreas	Pancrea
3	chr3:159808200-159813200	Weak transcription	Esophagus	oesophagus
4	chr3:159809200-159809600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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