Variant report

Variant	rs7624350
Chromosome Location	chr3:159769914-159769915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12634498	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1580794	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680554	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4680556	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441291	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794509	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795264	0.89[EUR][1000 genomes]
rs937478	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9810636	0.89[EUR][1000 genomes]
rs9811184	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9820728	0.88[EUR][1000 genomes]
rs9826517	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9835257	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9847609	0.89[EUR][1000 genomes]
rs9847915	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9848879	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9866988	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9880855	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159766400-159770200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:159766400-159772800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:159767600-159770200	Weak transcription	Fetal Heart	heart
4	chr3:159767600-159770200	Weak transcription	Pancreas	Pancrea
5	chr3:159767600-159770200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:159767600-159770600	Weak transcription	Aorta	Aorta
7	chr3:159768000-159770000	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:159768000-159771000	Weak transcription	Gastric	stomach
9	chr3:159768200-159770000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:159768800-159770400	Enhancers	HepG2	liver
11	chr3:159769800-159770000	Enhancers	HMEC	breast
12	chr3:159769800-159771000	Active TSS	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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