Variant report
| Variant | rs73015562 |
|---|---|
| Chromosome Location | chr3:157311845-157311846 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs11508696 | 0.85[AFR][1000 genomes] |
| rs1596343 | 0.85[AFR][1000 genomes] |
| rs1596346 | 0.85[AFR][1000 genomes] |
| rs1596347 | 0.85[AFR][1000 genomes] |
| rs1596348 | 0.85[AFR][1000 genomes] |
| rs16827846 | 0.85[AFR][1000 genomes] |
| rs16847092 | 0.81[AFR][1000 genomes] |
| rs1822395 | 0.85[AFR][1000 genomes] |
| rs1822397 | 0.85[AFR][1000 genomes] |
| rs2218357 | 0.85[AFR][1000 genomes] |
| rs4299437 | 0.85[AFR][1000 genomes] |
| rs56978441 | 0.85[AFR][1000 genomes] |
| rs57302345 | 0.85[AFR][1000 genomes] |
| rs57402090 | 0.85[AFR][1000 genomes] |
| rs57711198 | 0.81[AFR][1000 genomes] |
| rs58228461 | 0.85[AFR][1000 genomes] |
| rs58409217 | 0.81[AFR][1000 genomes] |
| rs59725665 | 0.81[AFR][1000 genomes] |
| rs60053317 | 0.81[AFR][1000 genomes] |
| rs60056712 | 0.85[AFR][1000 genomes] |
| rs66492295 | 0.85[AFR][1000 genomes] |
| rs66507550 | 0.85[AFR][1000 genomes] |
| rs66590639 | 0.85[AFR][1000 genomes] |
| rs66748594 | 0.85[AFR][1000 genomes] |
| rs67109050 | 0.88[AFR][1000 genomes] |
| rs67214719 | 0.85[AFR][1000 genomes] |
| rs67317271 | 0.85[AFR][1000 genomes] |
| rs67342635 | 0.85[AFR][1000 genomes] |
| rs67679572 | 0.85[AFR][1000 genomes] |
| rs67962803 | 0.90[AFR][1000 genomes] |
| rs67990725 | 0.85[AFR][1000 genomes] |
| rs68073943 | 0.85[AFR][1000 genomes] |
| rs73013701 | 0.81[AFR][1000 genomes] |
| rs73015513 | 0.81[AFR][1000 genomes] |
| rs73015516 | 0.81[AFR][1000 genomes] |
| rs73015531 | 0.85[AFR][1000 genomes] |
| rs73015533 | 0.81[AFR][1000 genomes] |
| rs73015537 | 0.81[AFR][1000 genomes] |
| rs73015558 | 0.84[AFR][1000 genomes] |
| rs7649021 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829767 | chr3:157306411-157490444 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:157308600-157312200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr3:157309000-157312200 | Weak transcription | Adipose Nuclei | Adipose |
| 3 | chr3:157311600-157312400 | Weak transcription | Fetal Lung | lung |
