Variant report

Variant	rs73017555
Chromosome Location	chr3:158483804-158483805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:158461553..158464844-chr3:158481750..158486798,5	K562	blood:
2	chr3:158482314..158484425-chr3:158485619..158487741,2	MCF-7	breast:
3	chr3:158483455..158485711-chr3:158486925..158489152,2	MCF-7	breast:
4	chr3:158477568..158480525-chr3:158482455..158485821,4	MCF-7	breast:
5	chr3:158458577..158461138-chr3:158482458..158485038,2	MCF-7	breast:
6	chr3:158482236..158484522-chr3:158493434..158494936,2	K562	blood:
7	chr3:158481568..158484125-chr3:158484857..158486850,2	MCF-7	breast:
8	chr3:158483650..158485316-chr3:158488021..158490619,2	K562	blood:

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59215924	0.95[AFR][1000 genomes]
rs60332618	0.91[AFR][1000 genomes]
rs73015639	0.91[AFR][1000 genomes]
rs73015640	0.83[AFR][1000 genomes]
rs73017546	0.95[AFR][1000 genomes]
rs73017563	0.95[AFR][1000 genomes]
rs73017566	0.95[AFR][1000 genomes]
rs73017576	0.95[AFR][1000 genomes]
rs73030863	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1014255	chr3:158358860-158768542	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv532665	chr3:158370013-158754245	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv948755	chr3:158388780-158672287	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv877692	chr3:158430706-158828643	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1001450	chr3:158440011-158768399	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv536777	chr3:158440011-158768399	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv877693	chr3:158470321-158583004	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv1006146	chr3:158475824-158625778	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv592123	chr3:158477796-158625128	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158450800-158485400	Weak transcription	Psoas Muscle	Psoas
2	chr3:158451000-158484200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:158451000-158485800	Weak transcription	Fetal Kidney	kidney
4	chr3:158453600-158486400	Weak transcription	Esophagus	oesophagus
5	chr3:158457400-158486000	Weak transcription	Right Ventricle	heart
6	chr3:158457800-158486200	Weak transcription	Pancreas	Pancrea
7	chr3:158460400-158486000	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:158466000-158486000	Weak transcription	Aorta	Aorta
9	chr3:158466000-158486200	Weak transcription	Gastric	stomach
10	chr3:158466200-158486200	Weak transcription	Brain Angular Gyrus	brain
11	chr3:158466200-158486200	Weak transcription	Fetal Brain Male	brain
12	chr3:158466600-158485600	Weak transcription	Colonic Mucosa	Colon
13	chr3:158466600-158486200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:158466800-158486000	Weak transcription	Spleen	Spleen
15	chr3:158466800-158486200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:158466800-158486200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:158467600-158485000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:158467600-158486000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:158468000-158486200	Weak transcription	Lung	lung
20	chr3:158468200-158488200	Weak transcription	Primary T cells from cord blood	blood
21	chr3:158468600-158485000	Weak transcription	Fetal Intestine Large	intestine
22	chr3:158472400-158486000	Weak transcription	Small Intestine	intestine
23	chr3:158473400-158484200	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:158479200-158485600	Weak transcription	Fetal Intestine Small	intestine
25	chr3:158479600-158495600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr3:158481200-158485800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:158481400-158485800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:158481400-158485800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr3:158482600-158484000	Enhancers	A549	lung
30	chr3:158482600-158486400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:158482800-158490600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:158483200-158484000	Enhancers	Osteobl	bone
33	chr3:158483400-158490600	Enhancers	HMEC	breast
34	chr3:158483600-158484000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:158483600-158484800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:158483600-158484800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:158483600-158484800	Weak transcription	Fetal Muscle Leg	muscle
38	chr3:158483600-158485000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:158483600-158485000	Weak transcription	Fetal Stomach	stomach
40	chr3:158483600-158485600	Weak transcription	Adipose Nuclei	Adipose
41	chr3:158483600-158485600	Weak transcription	HSMM	muscle
42	chr3:158483600-158486200	Enhancers	Stomach Smooth Muscle	stomach
43	chr3:158483800-158485000	Weak transcription	Fetal Lung	lung
44	chr3:158483800-158485600	Weak transcription	NH-A	brain
45	chr3:158483800-158485600	Weak transcription	NHLF	lung
46	chr3:158483800-158485800	Weak transcription	HUVEC	blood vessel
47	chr3:158483800-158486000	Weak transcription	Fetal Heart	heart
48	chr3:158483800-158486000	Weak transcription	Left Ventricle	heart
49	chr3:158483800-158486000	Weak transcription	Right Atrium	heart

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