Variant report

Variant	rs73017566
Chromosome Location	chr3:158509206-158509207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:158257158..158257872-chr3:158508800..158509788,3	K562	blood:
2	chr3:158457772..158460756-chr3:158508889..158511384,2	K562	blood:
3	chr3:158445207..158446704-chr3:158508810..158509868,10	K562	blood:
4	chr3:158376931..158378132-chr3:158508710..158509491,4	K562	blood:
5	chr3:158362236..158365683-chr3:158505400..158510880,4	K562	blood:
6	chr3:158508701..158511272-chr3:158518421..158519921,2	K562	blood:
7	chr17:61444526..61445046-chr3:158508820..158509408,2	MCF-7	breast:
8	chr3:158256966..158258990-chr3:158506924..158509258,2	MCF-7	breast:
9	chr3:158442646..158445031-chr3:158506699..158509425,2	MCF-7	breast:
10	chr3:158377083..158377772-chr3:158508869..158509646,4	MCF-7	breast:
11	chr3:158256896..158258122-chr3:158508181..158509486,5	MCF-7	breast:
12	chr3:158508849..158509668-chr3:158521993..158522493,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000240207	Chromatin interaction
ENSG00000118855	Chromatin interaction
ENSG00000168827	Chromatin interaction
ENSG00000272247	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59215924	1.00[AFR][1000 genomes]
rs60332618	0.95[AFR][1000 genomes]
rs73015639	0.95[AFR][1000 genomes]
rs73015640	0.87[AFR][1000 genomes]
rs73017546	1.00[AFR][1000 genomes]
rs73017555	0.95[AFR][1000 genomes]
rs73017563	1.00[AFR][1000 genomes]
rs73017576	1.00[AFR][1000 genomes]
rs73030863	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1014255	chr3:158358860-158768542	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv532665	chr3:158370013-158754245	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv948755	chr3:158388780-158672287	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv877692	chr3:158430706-158828643	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1001450	chr3:158440011-158768399	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv536777	chr3:158440011-158768399	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv877693	chr3:158470321-158583004	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv1006146	chr3:158475824-158625778	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv592123	chr3:158477796-158625128	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv1002514	chr3:158484027-158673414	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
14	nsv536778	chr3:158484027-158673414	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158486800-158518200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:158492200-158510600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:158507200-158509600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:158507200-158510400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:158507400-158510000	Weak transcription	NHLF	lung
6	chr3:158508600-158509400	Enhancers	Dnd41	blood
7	chr3:158508800-158509400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:158508800-158509400	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:158508800-158509400	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr3:158508800-158509400	Active TSS	Duodenum Mucosa	Duodenum
11	chr3:158508800-158509400	Flanking Active TSS	HUVEC	blood vessel
12	chr3:158508800-158509600	Enhancers	Primary hematopoietic stem cells	blood
13	chr3:158509000-158509400	Active TSS	Fetal Kidney	kidney
14	chr3:158509000-158509400	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr3:158509000-158509400	Enhancers	Stomach Mucosa	stomach
16	chr3:158509000-158509400	Active TSS	A549	lung
17	chr3:158509000-158509400	Active TSS	Hela-S3	cervix
18	chr3:158509000-158509400	Active TSS	Monocytes-CD14+_RO01746	blood
19	chr3:158509000-158509400	Active TSS	NH-A	brain
20	chr3:158509000-158510000	Weak transcription	HSMM	muscle
21	chr3:158509200-158509400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:158509200-158509400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:158509200-158509400	Flanking Active TSS	Liver	Liver
24	chr3:158509200-158509400	Active TSS	Colon Smooth Muscle	Colon
25	chr3:158509200-158509400	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr3:158509200-158509400	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr3:158509200-158509600	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr3:158509200-158509600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:158509200-158509800	Weak transcription	HSMMtube	muscle
30	chr3:158509200-158510200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:158509200-158510200	Weak transcription	HMEC	breast
32	chr3:158509200-158510200	Weak transcription	NHDF-Ad	bronchial
33	chr3:158509200-158510400	Weak transcription	NHEK	skin
34	chr3:158509200-158510600	Weak transcription	K562	blood
35	chr3:158509200-158511400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:158509200-158512000	Enhancers	Osteobl	bone
37	chr3:158509200-158512600	Weak transcription	Brain Hippocampus Middle	brain
38	chr3:158509200-158518200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:158509200-158519000	Weak transcription	Aorta	Aorta
40	chr3:158509200-158519200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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