Variant report

Variant	rs73017767
Chromosome Location	chr2:168203417-168203418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10167846	1.00[ASN][1000 genomes]
rs10171431	1.00[ASN][1000 genomes]
rs13386288	1.00[ASN][1000 genomes]
rs13386551	1.00[ASN][1000 genomes]
rs13400173	1.00[ASN][1000 genomes]
rs13404088	1.00[ASN][1000 genomes]
rs16853505	1.00[ASN][1000 genomes]
rs73017764	1.00[AFR][1000 genomes]
rs73017770	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023866	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168194200-168211600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:168199200-168209000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:168199600-168221400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:168202400-168203600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:168202400-168203600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:168203000-168203800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:168203200-168204400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:168203400-168204200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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