Variant report

Variant	rs73017764
Chromosome Location	chr2:168203186-168203187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10191894	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10200054	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13385369	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13395423	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13432607	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3749002	1.00[EUR][1000 genomes]
rs57270001	1.00[EUR][1000 genomes]
rs58721716	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59899923	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60205651	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61733879	1.00[EUR][1000 genomes]
rs73012054	1.00[EUR][1000 genomes]
rs73012057	1.00[EUR][1000 genomes]
rs73012059	1.00[EUR][1000 genomes]
rs73012062	1.00[EUR][1000 genomes]
rs73012070	1.00[EUR][1000 genomes]
rs73012073	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73012080	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73012100	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73013905	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73015832	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73015836	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73015837	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73015840	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73015841	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73015869	0.94[ASN][1000 genomes]
rs73017746	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73017767	1.00[AFR][1000 genomes]
rs73017770	0.90[AFR][1000 genomes]
rs73029722	1.00[EUR][1000 genomes]
rs73029735	1.00[EUR][1000 genomes]
rs73029741	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168194200-168211600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:168199200-168209000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:168199600-168221400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:168200600-168203200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:168201800-168203400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:168202400-168203600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:168202400-168203600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:168202800-168203200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:168203000-168203800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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