Variant report

Variant	rs73029722
Chromosome Location	chr2:168071492-168071493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10166605	0.83[AMR][1000 genomes]
rs10191894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10200054	1.00[EUR][1000 genomes]
rs12613845	0.83[AMR][1000 genomes]
rs12618608	0.83[AMR][1000 genomes]
rs13384317	0.83[AMR][1000 genomes]
rs13385369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13385879	0.83[AMR][1000 genomes]
rs13395423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428468	0.83[AMR][1000 genomes]
rs13432607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3749002	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57270001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58721716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59899923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60205651	1.00[EUR][1000 genomes]
rs61733879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73012054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73012057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73012059	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73012062	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73012070	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73012073	1.00[EUR][1000 genomes]
rs73012080	1.00[EUR][1000 genomes]
rs73012100	1.00[EUR][1000 genomes]
rs73013905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015832	1.00[EUR][1000 genomes]
rs73015836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015840	1.00[EUR][1000 genomes]
rs73015841	1.00[EUR][1000 genomes]
rs73015867	0.83[AMR][1000 genomes]
rs73015869	0.83[AMR][1000 genomes]
rs73015872	0.83[AMR][1000 genomes]
rs73015882	0.83[AMR][1000 genomes]
rs73017743	0.83[AMR][1000 genomes]
rs73017746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017753	0.83[AMR][1000 genomes]
rs73017755	0.83[AMR][1000 genomes]
rs73017764	1.00[EUR][1000 genomes]
rs73029735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73029741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73029744	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002883	chr2:168023423-168072247	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv583589	chr2:168024328-168073830	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv583590	chr2:168024328-168075621	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv997489	chr2:168025002-168072247	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1015022	chr2:168027758-168072247	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168049600-168078800	Weak transcription	Right Ventricle	heart
2	chr2:168056800-168114000	Weak transcription	Psoas Muscle	Psoas
3	chr2:168066600-168072000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:168067400-168096000	Weak transcription	Left Ventricle	heart
5	chr2:168068600-168078600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:168068600-168079000	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:168068800-168074800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr2:168070400-168072000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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