Variant report

Variant	rs57270001
Chromosome Location	chr2:168084456-168084457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:168082475..168084083-chr2:168084397..168086061,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10166605	0.83[AMR][1000 genomes]
rs10191894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10200054	1.00[EUR][1000 genomes]
rs12613845	0.83[AMR][1000 genomes]
rs12618608	0.83[AMR][1000 genomes]
rs13384317	0.83[AMR][1000 genomes]
rs13385369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13385879	0.83[AMR][1000 genomes]
rs13395423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428468	0.83[AMR][1000 genomes]
rs13432607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3749002	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58721716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59899923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60205651	1.00[EUR][1000 genomes]
rs61733879	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73012054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73012057	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73012059	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73012062	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73012070	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73012073	1.00[EUR][1000 genomes]
rs73012080	1.00[EUR][1000 genomes]
rs73012100	1.00[EUR][1000 genomes]
rs73013905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015832	1.00[EUR][1000 genomes]
rs73015836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015840	1.00[EUR][1000 genomes]
rs73015841	1.00[EUR][1000 genomes]
rs73015867	0.83[AMR][1000 genomes]
rs73015869	0.83[AMR][1000 genomes]
rs73015872	0.83[AMR][1000 genomes]
rs73015882	0.83[AMR][1000 genomes]
rs73017743	0.83[AMR][1000 genomes]
rs73017746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017753	0.83[AMR][1000 genomes]
rs73017755	0.83[AMR][1000 genomes]
rs73017764	1.00[EUR][1000 genomes]
rs73029722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73029735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73029741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73029744	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168056800-168114000	Weak transcription	Psoas Muscle	Psoas
2	chr2:168067400-168096000	Weak transcription	Left Ventricle	heart
3	chr2:168077200-168084600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:168079800-168084800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:168083800-168095800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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