Variant report

Variant	rs73015836
Chromosome Location	chr2:168175204-168175205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10166605	0.83[AMR][1000 genomes]
rs10191894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200054	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12613845	0.83[AMR][1000 genomes]
rs12618608	0.83[AMR][1000 genomes]
rs13384317	0.83[AMR][1000 genomes]
rs13385369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385879	0.83[AMR][1000 genomes]
rs13395423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428468	0.83[AMR][1000 genomes]
rs13432607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749002	1.00[EUR][1000 genomes]
rs57270001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58721716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58989564	1.00[AFR][1000 genomes]
rs59899923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60205651	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61733879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012059	1.00[EUR][1000 genomes]
rs73012062	1.00[EUR][1000 genomes]
rs73012070	1.00[EUR][1000 genomes]
rs73012073	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73012080	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73012100	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73013905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015832	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015840	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015841	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015843	1.00[AFR][1000 genomes]
rs73015845	1.00[AFR][1000 genomes]
rs73015867	0.83[AMR][1000 genomes]
rs73015869	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73015872	0.83[AMR][1000 genomes]
rs73015882	0.83[AMR][1000 genomes]
rs73017743	0.83[AMR][1000 genomes]
rs73017746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73017753	0.83[AMR][1000 genomes]
rs73017755	0.83[AMR][1000 genomes]
rs73017764	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73029722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73029735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73029741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73029744	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1008704	chr2:168153525-168196371	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2763488	chr2:168163136-168181440	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168174000-168175800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr2:168174000-168176000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr2:168174200-168179400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:168174400-168176000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:168174800-168175800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:168174800-168176200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr2:168174800-168176400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr2:168174800-168176600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr2:168175000-168175600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:168175200-168175400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:168175200-168175600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:168175200-168175800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:168175200-168175800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr2:168175200-168175800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:168175200-168176000	Strong transcription	iPS-15b Cell Line	embryonic stem cell

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