Variant report

Variant	rs73017984
Chromosome Location	chr1:160775949-160775950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160696717..160697289-chr1:160775794..160776301,2	MCF-7	breast:
2	chr1:160769451..160770985-chr1:160774299..160776734,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6684910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015971	0.81[AFR][1000 genomes]
rs73017944	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73017956	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73017964	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73017985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019969	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160771000-160806600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:160771600-160777400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr1:160771800-160777200	Weak transcription	Gastric	stomach
4	chr1:160772200-160782000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:160772400-160776200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:160772400-160777000	Weak transcription	Thymus	Thymus
7	chr1:160772400-160777200	Weak transcription	Spleen	Spleen
8	chr1:160772400-160777600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:160772800-160776000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:160773200-160777000	Weak transcription	Fetal Thymus	thymus
11	chr1:160773600-160776400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:160773600-160777200	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr1:160774400-160782400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:160775200-160776000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:160775400-160777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:160775400-160777200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr1:160775400-160777200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:160775400-160777400	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr1:160775400-160777400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr1:160775400-160778400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:160775600-160776000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr1:160775600-160776000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr1:160775600-160783000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr1:160775800-160776200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr1:160775800-160777200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

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