Variant report

Variant	rs73019969
Chromosome Location	chr1:160790436-160790437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160786153..160788877-chr1:160788974..160791369,2	K562	blood:
2	chr1:160697110..160698910-chr1:160790378..160792048,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6684910	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73017944	0.82[AFR][1000 genomes]
rs73017956	0.88[AFR][1000 genomes]
rs73017964	0.86[AFR][1000 genomes]
rs73017984	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73017985	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160771000-160806600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:160778000-160795600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:160778000-160798400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr1:160778400-160799600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:160782400-160798200	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:160782600-160803200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr1:160783400-160791000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:160783800-160798200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr1:160783800-160801000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:160783800-160803200	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr1:160786600-160792800	Weak transcription	Spleen	Spleen
12	chr1:160788200-160793200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:160789000-160791200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:160789200-160790600	Weak transcription	Primary T cells from cord blood	blood
15	chr1:160789200-160791200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:160789200-160792000	Weak transcription	Thymus	Thymus
17	chr1:160789200-160792400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr1:160789400-160792400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:160789400-160792600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:160789400-160792800	Weak transcription	Fetal Thymus	thymus
21	chr1:160789600-160791200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:160790000-160793200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:160790000-160794200	Strong transcription	Primary B cells from cord blood	blood
24	chr1:160790400-160791000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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