Variant report
| Variant | rs73018048 |
|---|---|
| Chromosome Location | chr2:148556998-148556999 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:148555853..148558314-chr2:148561785..148564428,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11883657 | 1.00[AMR][1000 genomes] |
| rs11884541 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11903941 | 1.00[AMR][1000 genomes] |
| rs17232015 | 1.00[AMR][1000 genomes] |
| rs17232022 | 1.00[AMR][1000 genomes] |
| rs57219455 | 1.00[AMR][1000 genomes] |
| rs6705517 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6737271 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73003432 | 1.00[AMR][1000 genomes] |
| rs73003434 | 1.00[AMR][1000 genomes] |
| rs73003439 | 1.00[AMR][1000 genomes] |
| rs73003443 | 1.00[AMR][1000 genomes] |
| rs73003455 | 1.00[AMR][1000 genomes] |
| rs73003466 | 1.00[AMR][1000 genomes] |
| rs73003478 | 1.00[AMR][1000 genomes] |
| rs73005148 | 1.00[AMR][1000 genomes] |
| rs73005150 | 1.00[AMR][1000 genomes] |
| rs73005154 | 1.00[AMR][1000 genomes] |
| rs73005176 | 1.00[AMR][1000 genomes] |
| rs73007121 | 1.00[AMR][1000 genomes] |
| rs73018025 | 1.00[AMR][1000 genomes] |
| rs73018039 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73018047 | 1.00[AMR][1000 genomes] |
| rs73018083 | 1.00[AMR][1000 genomes] |
| rs73018086 | 1.00[AMR][1000 genomes] |
| rs73018088 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73020006 | 1.00[AMR][1000 genomes] |
| rs73020017 | 1.00[AMR][1000 genomes] |
| rs73020021 | 1.00[AMR][1000 genomes] |
| rs73020026 | 1.00[AMR][1000 genomes] |
| rs73020034 | 1.00[AMR][1000 genomes] |
| rs73020036 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875275 | chr2:148166428-148711242 | Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv916286 | chr2:148438001-148977722 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv529388 | chr2:148471340-148934846 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 4 | esv3392562 | chr2:148476961-148843061 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:148556600-148557800 | Weak transcription | HSMMtube | muscle |
