Variant report

Variant	rs73018221
Chromosome Location	chr3:157048726-157048727
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57038071	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58139327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73016274	0.80[AFR][1000 genomes]
rs73016286	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275099	chr3:157046192-157049852	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:157039800-157051000	Weak transcription	HUVEC	blood vessel
3	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
4	chr3:157046600-157049400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:157047200-157049600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:157047400-157050000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:157047600-157049800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:157047800-157049200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:157047800-157051200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157048000-157049000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:157048000-157051000	Weak transcription	NHLF	lung
12	chr3:157048000-157054600	Enhancers	NHDF-Ad	bronchial
13	chr3:157048200-157051000	Weak transcription	Osteobl	bone
14	chr3:157048200-157057000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:157048400-157049400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:157048400-157051000	Weak transcription	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links