Variant report

Variant	rs73016274
Chromosome Location	chr3:157007055-157007056
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:157005885..157009539-chr3:157009923..157012607,4	K562	blood:
2	chr3:156999731..157001800-chr3:157004485..157007413,2	MCF-7	breast:
3	chr3:157007024..157009748-chr3:157011757..157013274,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56851214	1.00[AMR][1000 genomes]
rs56982459	1.00[AMR][1000 genomes]
rs57459645	1.00[AMR][1000 genomes]
rs58139327	0.80[AFR][1000 genomes]
rs73012170	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012193	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73016286	0.85[AFR][1000 genomes]
rs73018221	0.80[AFR][1000 genomes]
rs73018262	1.00[AMR][1000 genomes]
rs73018267	1.00[AMR][1000 genomes]
rs73018269	1.00[AMR][1000 genomes]
rs73020273	1.00[AMR][1000 genomes]
rs73020298	1.00[AMR][1000 genomes]
rs73020302	1.00[AMR][1000 genomes]
rs73028043	1.00[AMR][1000 genomes]
rs7624732	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:157001600-157008200	Weak transcription	NH-A	brain
4	chr3:157003600-157007400	Weak transcription	Fetal Stomach	stomach
5	chr3:157003600-157011800	Weak transcription	Fetal Lung	lung
6	chr3:157003800-157007600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:157004200-157007400	Weak transcription	NHLF	lung
8	chr3:157004400-157007200	Weak transcription	NHDF-Ad	bronchial
9	chr3:157004400-157007600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:157004600-157008000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
12	chr3:157005000-157008200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:157005600-157010400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:157006000-157011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:157006200-157007200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:157006200-157007400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:157007000-157007200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:157007000-157009600	Enhancers	Osteobl	bone
20	chr3:157007000-157010400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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